Amsterdam Science Park Study Group

LET'S MAKE RESEARCH FASTER, BETTER AND MORE OPEN!

EVENTS

An afternoon dedicated to the SILS/IBED Crunchomics computing cluster. After a small introduction to the Crunchomics system, a demonstration of how to connect to crunchomics and how to execute a genomic pipeline will be given.

We will guide you regarding connection using the ssh protocol, navigating the file system using Shell commands and how to create an environment dedicated to your needs using conda. We will then dig deeper by introducing the SLURM queuing system for batch jobs.

People involved: Marc Galland, Evelien Jongepier, Wim de Leeuw, Han Rauwerda.

!! Important !! Please follow the instructions here to make sure that you have a working installation of the Unix Shell.

To register: https://www.eventbrite.co.uk/e/252944743537


An afternoon dedicated to basic statistics for biologists. After this event, you will be able to better understand how to decide on the number of biological replicates needed for your experiment, get basic notions on inference statistics and apply it to your daily work.

People involved: Marc Galland, Emiel van Loon.

Registration is mandatory and free: please enroll here.

Please find a complete list of our past events on the dedicated events page.

WHAT WE DO

The Amsterdam Science Park Study Group is dedicated to building a community of computational scientists in biology and other disciplines.

This Amsterdam Science Park Study Group promotes skill sharing and collaboration by:

All are welcome regardless of their scientific research area, affiliation or training level.

Lessons

Workshops

Two-day Data and Software Carpentry workshops to practice and learn coding. We also do shorter themed sessions.

Pair Programming

Tool development

Creation of ad hoc applications and pipelines for research

Community Building​

Meet your peers and start working together. Ask and answer questions.